PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 220aa    MW: 24423.1 Da    PI: 5.9549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013280genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-3165121358
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                  D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+vv+itY +eHnh
  DCAR_013280  65 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRKDPTVVVITYVSEHNH 121
                  99************************998**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3152121IPR003657WRKY domain
PROSITE profilePS5081130.56158121IPR003657WRKY domain
SuperFamilySSF1182902.35E-2658121IPR003657WRKY domain
SMARTSM007741.5E-3563123IPR003657WRKY domain
PfamPF031066.8E-2665121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRKHTRYANS SLHHDQDDPD TTSETAAGSP LSGDDTSTVL PPTKRNGGKR VVTVAFDADV  60
YPPPDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRKDPTV VVITYVSEHN  120
HLRRATKNSQ NTATVPAESP PREMAVLADQ TDTEPENMDF SDFFAEFGYF SHITSVILEI  180
PVTTSFRCLE PEAKPMYTRD EEDSLFADLG ELPGCSLIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-18651211671WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277383.11e-58PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP567e-46WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A127AZ162e-93A0A127AZ16_PANGI; WRKY6 transcription factor
STRINGGLYMA13G36540.12e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-47WRKY DNA-binding protein 65